species:   Rhsol
pid:       PID0591
parent:    Rhi-milR-51
paralog:   
locus:     KB317701.1:443221-443305
matures:   ['CCGAGAUCGUGAGCUCUGAAGAC', 'CUUCAUCCUCUACACUUCGGGU']
srr:       SRR1994875
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram KB317701.1:443221-443305

0 out of bounds
7 alignments
7 proper strand
7 stranded perfect matches

       **************************   *************************                        
UUCUGCCCUCCCGAGAUCGUGAGCUCUGAAGACCCCCUCUUCAUCCUCUACACUUCGGGUUCGACUGGUCGCCCCAAGGGUGUCG
.........((((((.....(((...((((((.....))))))..))).....))))))........(.(((((...))))).).
----------CCGAGAUCGUGAGCUCUGAAGAC---------------------------------------------------- l=23 a=0 c
--------------------------------------CUUCAUCCUCUACACUUCGGGU------------------------- l=22 a=0 c*
---------CCCGAGAUCGUGAGCUCUGAAGAC---------------------------------------------------- l=24 a=2 ma
--------------------------------------CUUCAUCCUCUACACUUCGGGUU------------------------ l=23 a=0 ma*

---------------AUCGUGAGCUCUGAAGAC---------------------------------------------------- l=18 a=1 
---------CCCGAGAUCGUGAGCUCUGAAGAC---------------------------------------------------- l=24 a=2 (ma)
---------CCCGAGAUCGUGAGCUCUGAAGACC--------------------------------------------------- l=25 a=1 
--------UCCCGAGAUCGUGAGCUCUGAAGAC---------------------------------------------------- l=25 a=1 
--------UCCCGAGAUCGUGAGCUCUGAAGACC--------------------------------------------------- l=26 a=1 
------CCUCCCGAGAUCGUGAGCUCUGAAGACC--------------------------------------------------- l=28 a=1 

mb-01011
ax-1001011
ku-01
ss-101111101110
fn-111
